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March 21, 2025
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Hidden Software Development Costs: What Leaders Overlook

Having a great product idea is one thing, but knowing whether it will cost $20,000 or more is another. Business leaders, particularly those in the mid-market segment with a careful budget, need to understand the actual cost of software development—the underlying expenses that are often not reflected in the project budget document.

Although you may come across various service providers stating fixed software development costs, factors such as project scope, tech stack choices, ongoing maintenance, and hidden challenges can significantly increase your costs beyond initial estimations.

In this blog, we’ll discuss the hidden costs of software development that often go unnoticed and explore best practices to mitigate these costs.

6 Major Hidden Software Development Costs

Software development costs often extend far beyond the design and prototyping, development, testing, and deployment phases.

This brings us to the unforeseen costs that leaders often overlook, but are equally important to consider in your software development budget.

Technical debt

Technical debt accumulates when developers opt for quick fixes and shortcuts over sustainable solutions. The workaround may expedite delivery, but it ultimately results in poor code quality that is more difficult to maintain and update. Additionally, increased debugging and refactoring costs, as well as slower feature development, also contribute to the list of cost to develop software.

To counter technical debt, leaders must work with the right tech partners who follow best practices, designate time for code reviews and refactoring, and avoid rushed deadlines that leave shortcuts as the only practical options.

Companies that ignore technical debt often spend two to three times more on maintenance and future updates in the long run, making it a significant long-term software development cost.

Handpicked content: What is Agile Technical Debt? A Comprehensive Guide for Business Leaders

Ongoing maintenance & support

Software development isn’t a typical “make it and move on” investment. However, post-launch activities involve regular upkeep, including bug fixes, performance optimizations, security patches, compatibility updates for new operating systems or hardware, and customer support, particularly for SaaS or enterprise applications.

According to research, approximately 60% of a software product’s lifecycle expenses are allocated towards maintenance. Both technical and non-technical factors for different types of application maintenance can consume a significant portion of a product’s lifecycle expenses.

Let’s discuss the failed launch of www.HealthCare.gov. Poor planning, hasty development, and inadequate testing skyrocketed the cost to $1.7 billion, initially estimated at $93.7 million.

The platform crashed within hours of launch, struggling to handle user traffic due to partially completed features, faulty data transmission, and critical login failures. Developers had to rewrite large portions of the code, which delayed fixes and significantly increased long-term maintenance costs.

Scalability challenges

Many businesses build software with an MVP mindset, focusing on immediate needs or the bare minimum solutions rather than long-term growth. However, if the platform isn’t made to scale, rapid user growth can lead to server overloads, performance bottlenecks, and even complete system failures.

For instance, a sudden surge in online traffic can crash poorly optimized servers, leading to downtime and lost revenue.

Additionally, scaling often requires costly database migrations, which are expensive and time-consuming. Although cloud services like AWS and Azure offer flexibility, their pay-as-you-go models can incur unexpectedly high bills if auto-scaling isn’t carefully managed.

If technical debt accumulates early, businesses may even be forced to undergo a complete system rewrite, which is far more expensive than building for scalability from the outset.

Integration with third-party tools

Most tools don’t work in silos; they need to connect with existing tools like CRMs, ERPs, or payment processors. These integrations often come with hidden costs, such as custom API development for platforms with outdated interfaces.

Most legacy systems lack modern APIs, forcing developers to build custom middleware or depend on costly integration platforms like MuleSoft or Zapier.

Third, licensing fees for third-party tools can also add up, certainly if pricing is based on API calls or user counts. Consequently, security risks increase when integrating with external systems, potentially requiring extra compliance audits.

Training & onboarding

Even the best software is bound to fail if users cannot effectively adopt it. Second, many business leaders don’t value the time and money required for training employees and onboarding customers.

As leaders, we need to recognize that employees require workshops, documentation, and hands-on support to adapt to new workflows, as inadequate training can lead to productivity losses during the transition.

For customer-facing software, such as ecommerce apps, self-service banking portals, and helpdesk tools, the complexity of onboarding can drive up support costs.

Without step-by-step tutorials, live demos, or explanatory resources, users may struggle, leading to frustration and higher churn rates. Moreover, ongoing support demands, such as help desks or troubleshooting, can further spike expenses.

Regulatory compliance & security

Handling sensitive data requires strict adherence to regulations such as GDPR and HIPAA, which often result in unexpected expenses. Businesses must consider investing in security audits, penetration testing, data encryption, and other activities that require specialized expertise and infrastructure.

Non-compliance forces significant fines and reputational damage, making these software development costs both qualitatively and quantitatively critical.

Additionally, regulations are subject to change, requiring software updates, staff retraining, and ongoing audits. For example, payment processors must renew their PCI-DSS certifications annually, while healthcare service providers must continuously monitor and comply with changing HIPAA requirements.

Other costs often missed

In addition to the above-discussed hidden costs, other expenses can also strain the budget and timelines.

4 more hidden cost of software projects

How to Mitigate Hidden Costs in Development?

Companies that understand that capitalizing software development costs takes a proactive approach to development are better positioned to stay within budget. Below are five key strategies to minimize hidden costs.

Adopt agile practices

Teams using agile development can identify and resolve potential problems before they escalate into costly fixes. Aside from traditional approaches, where testing occurs only at the end, agile promotes short, iterative cycles, reducing the need for extensive rework.

Agile frameworks also offer flexibility in adjusting priorities in response to changing business needs. If a particular feature becomes unnecessary or too expensive to maintain, teams can pivot before committing additional resources. On the other hand, rigid development lacks this adaptability.

To implement agile philosophies effectively, leaders must set clear goals for each development cycle. Also, involve stakeholders regularly, run frequent QA to catch issues early, and maintain small, collaborative teams for timely addressing.

Plan & document

As we’ve discussed in one of our recent articles, business leaders often fail to give sufficient importance to technical documentation. And skipping thorough planning leads to ambiguous requirements, forcing developers to work through assumptions or intuitions that usually result in expensive changes later.

A well-planned project includes defined business and technical requirements, realistic milestones, risk assessment strategies, and accurate budget and timeline estimates.

The purpose of documenting all the moving parts, co-dependencies, and technical minutiae is to account for the possibilities of potential future software development costs. Apparently, no business owner likes to be taken by surprise when it comes to adjusting budgets.

Conduct code reviews

Rushed development without proper code reviews gives birth to technical debt, making future updates more difficult and costly. Whereas, timely code reviews help improve readability, efficiency, and catch security issues early on.

Refactoring, or rewriting inefficient or outdated code, should be an ongoing practice rather than a one-time job. The entire point of establishing coding standards, using automated security scanning tools, and enabling a culture of peer reviews is to ensure long-term code quality.

Neglecting these practices leads to higher maintenance costs, subpar development, and increased security risks.

Invest in continuous training

Developers, like digital marketers, don’t go anywhere with a single set of standard training sessions to last a lifetime. They need ongoing trainings to stay updated with best practices, security standards, and emerging technologies. Without it, companies typically build tools that are inefficient, vulnerable, or difficult to scale.

Regular training sessions and workshops will also reduce turnover costs, as developers are more likely to stay with employers who invest in their career growth and skill development opportunities.

Leaders must dedicate a portion of their software budget to training and professional certifications, host internal workshops, and encourage developers to take their time to experiment with new tools before implementation.

Leverage offshore development

Every phase in the software development business, planning, design, coding, testing, and maintenance, has its associated costs. And unexpected expenses, for all the different reasons we discussed above, can inflate budgets beyond initial estimates.

However, partnering with an offshore development tech partner provides a cost-effective solution for business leaders.

Offshore teams offer more than just software development cost estimation. They provide access to top talent, faster project delivery, increased control for clients, scalability to adjust team size as needed, and a focus on long-term maintainability to minimize future costs.

leverage offshore development

Conclusion

This concludes our guide on the hidden software development costs and how business leaders can recognize them without losing fortunes.

A cost-effective way to counter these financial pitfalls is partnering with experienced technology associates who know what they are doing.

These technology partners will connect you with the right technical and strategic resources to help you build a digital product tailored to your business needs. You can trust them to execute agile methodologies, conduct detailed code reviews, and maintain a focus on sustainable growth.

software development costs cta

Hidden Software Development Costs: What Leaders Overlook

Amir Faizi

CEO of Enterprise64, has 25+ years in tech. He co-founded several firms and launched Enterprise64 in 2017. He is a mentor and investor committed to empowering others and creating opportunities.

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